Mining Frequent Closed Itemsets using the NEclatClosed Algorithm (SPMF documentation)
How to run this example?
- If you are using the graphical interface, (1) choose the "NEclatClosed"algorithm, (2) select the input file "contextPasquier99.txt", (3) set the output file name (e.g. "output.txt") (4) set minsup to 40% and (5) click "Run algorithm".
- If you want to execute this example from the command
line, then execute this command:
java -jar spmf.jar run NEclatClosed contextPasquier99.txt output.txt 40% in a folder containing spmf.jar and the example input file contextPasquier99.txt. - If you are using the source code version of SPMF and want to launch NEclatClosed on the example input file contextPasquier99.txt, then launch the file "MainTestNEclatClosed.java"in the package ca.pfv.SPMF.tests.
What is NEclatClosed?
NEclatClosed is an algorithm designed for mining frequent closed itemsets proposed by Le et al. (2015). It internally uses a structure called N-List.What is the input of the NEclatClosed algorithm?
The input is a transaction database (aka binary context) and a threshold named minsup (a value between 0 and 100 %).
A transaction database is a set of transactions. Each transaction is a set of items. For example, consider the following transaction database. It contains 5 transactions (t1, t2, ..., t5) and 5 items (1,2, 3, 4, 5). For example, the first transaction represents the set of items 1, 3 and 4. This database is provided as the file contextPasquier99.txt in the SPMF distribution. It is important to note that an item is not allowed to appear twice in the same transaction and that items are assumed to be sorted by lexicographical order in a transaction.
Transaction id | Items |
t1 | {1, 3, 4} |
t2 | {2, 3, 5} |
t3 | {1, 2, 3, 5} |
t4 | {2, 5} |
t5 | {1, 2, 3, 5} |
What is the output of the NEclatClosed algorithm?
NEclatClosed outputs frequent closed itemsets. To explain what is a frequent closed itemset, it is necessary to review a few definitions.
An itemset is a unordered set of distinct items. The support of an itemset is the number of transactions that contain the itemset. For example, the itemset {1, 3} has a support of 3 because it appears in three transactions (t1, t3, t5) from the previous transaction database.
A frequent itemset is an itemset that appears in at least minsup transactions from the transaction database. A frequent closed itemset is a frequent itemset that is not included in a proper superset having exactly the same support. The set of frequent closed itemsets is thus a subset of the set of frequent itemsets. Why is it interesting to discover frequent closed itemsets ? The reason is that the set of frequent closed itemsets is usually much smaller than the set of frequent itemsets and it can be shown that no information is lost by discovering only frequent closed itemsets (because all the frequent itemsets can be regenerated from the set of frequent closed itemsets - see Zaki (2002) for more details).
If we apply NEclatClosed on the previous transaction database with a minsup of 40 % (2 transactions), we get the following result:
frequent closed itemsets | support |
{3} | 4 |
{1, 3} | 3 |
{2, 5} | 4 |
{2, 3, 5} | 3 |
{1, 2, 3, 5} | 2 |
How should I interpret the results?
In the results, each frequent closed itemset is annotated with its support. For example, the itemset {2, 3 5} has a support of 3 because it appears in transactions t2, t3 and t5. It is a frequent itemset because its support is higher or equal to the minsup parameter. It is a closed itemset because it has no proper superset having exactly the same support.
Input file format
The input file format used by NEclatClosed is defined as follows. It is a text file. An item is represented by a positive integer. A transaction is a line in the text file. In each line (transaction), items are separated by a single space. It is assumed that all items within a same transaction (line) are sorted according to a total order (e.g. ascending order) and that no item can appear twice within the same line.
For example, for the previous example, the input file is defined as follows:
1 3 4
2 3 5
1 2 3 5
2 5
1 2 3 5
Note that it is also possible to use the ARFF format as an alternative to the default input format. The specification of the ARFF format can be found here. Most features of the ARFF format are supported except that (1) the character "=" is forbidden and (2) escape characters are not considered. Note that when the ARFF format is used, the performance of the data mining algorithms will be slightly less than if the native SPMF file format is used because a conversion of the input file will be automatically performed before launching the algorithm and the result will also have to be converted. This cost however should be small.
Output file format
The output file format is defined as follows. It is a text file, where each line represents a frequent closed itemset. On each line, the items of the itemset are first listed. Each item is represented by an integer and it is followed by a single space. After, all the items, the keyword "#SUP:" appears, which is followed by an integer indicating the support of the itemset, expressed as a number of transactions. For example, we show below the output file for this example. The second line indicates the frequent itemset consisting of the item 1 and 3, and it indicates that this itemset has a support of 4 transactions.
3 #SUP: 4
1 3 #SUP: 3
2 5 #SUP: 4
2 3 5 #SUP: 3
1 2 3 5 #SUP: 2
Note that if the ARFF format is used as input instead of the default input format, the output format will be the same except that items will be represented by strings instead of integers.
Optional feature: giving names to items
Some users have requested the feature of given names to items instead of using numbers. This feature is offered in the user interface of SPMF and in the command line of SPMF. To use this feature, your file must include @CONVERTED_FROM_TEXT as first line and then several lines to define the names of items in your file. For example, consider the example database "contextPasquier99.txt". Here we have modified the file to give names to the items:
@CONVERTED_FROM_TEXT
@ITEM=1=apple
@ITEM=2=orange
@ITEM=3=tomato
@ITEM=4=milk
@ITEM=5=bread
1 3 4
2 3 5
1 2 3 5
2 5
1 2 3 5
In this file, the first line indicates, that it is a file where names are given to items. Then, the second line indicates that the item 1 is called "apple". The third line indicates that the item 2 is called "orange". Then the following lines define transactions in the SPMF format.
Then, if we apply the algorithm using this file using the user interface of SPMF or the command line, the output file contains several patterns, including the following ones:
orange tomato bread #SUP: 3
orange bread #SUP: 4
apple orange tomato bread #SUP: 2
Note that this feature could be also used from the source code of SPMF using the ResultConverter class. However, there is currently no example provided for using it from the source code.
Implementation details
This code was converted to Java by Nader Aryabarzan based on the original C# version obtained from Le et al..
Where can I get more information about the NEclatClosed algorithm?
This article describes the NEclatClosed algorithm:
Aryabarzan, N., & Minaei-Bidgoli, B. (2021). NEclatClosed: A vertical algorithm for mining frequent closed itemsets. Expert Systems with Applications, 174, 114738
Also, for a good overview of frequent itemset mining algorithms, you may read this survey paper.